Description

binning of metagenomic sequences

Input

Name
Description
Pattern

0 ()

1 ()

Output

Name
Description
Pattern

fasta ()

bins ()

fm ()

index ()

result ()

versions ()

Tools

clame Documentation

CLAME is a binning software for metagenomic reads. It immplements a fm-index search algorithm for nucleotide sequence alignment. Then it uses strongly connected component strategy to bin sequences with similar DNA composition.

doi: 10.1186/s12864-018-5191-yLicense: GPLv3
Authors