Description

Builds a Cuckoo filter or Cuckoo hash table index from reference sequences (FASTA/FASTQ) for fast contamination removal.

Input

Name
Description
Pattern

0 ()

1 ()

n_objects (integer)

The number of k-mers to be stored in hash table. Mandatory parameter.

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

cleanifier Documentation

A fast lightweight tool to remove contamination using k-mers.

doi: 10.1093/bioinformatics/btaf632License: MIT
Authors