Description

A multiple sequence alignment-trimming algorithm for accurate phylogenomic inference.

Input

Name
Description
Pattern

0 ()

1 ()

out_format (string)

Output format (aln,msa,fas,etc.), default is clipkit.

*

auxiliary_file (file)

Optional tab-delimited auxiliary file specifying which sites to keep or trim. Used in conjunction with the custom site trimming (cst) mode.

*.tsv

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

clipkit Documentation

ClipKIT is a fast and flexible alignment trimming tool that keeps phylogenetically informative sites and removes those with poor phylogenetic signal.

https://github.com/JLSteenwyk/ClipKITdoi: 10.1371/journal.pbio.3001007License: MIT
Authors