Description

Align sequences using Clustal Omega

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

hmm_in (file)

HMM file for profile alignment

*.hmm

hmm_batch (file)

specify HMMs for individual sequences

*.hmm

profile1 (file)

Pre-aligned multiple sequence file 1

*.{alnfaa,faa,fa,fasta}

profile2 (file)

Pre-aligned multiple sequence file 2

*.{alnfaa,faa,fa,fasta}

compress (boolean)

Flag representing whether the output MSA should be compressed. Set to true to enable/false to disable compression. Compression is done using pigz, and is multithreaded.

Output

Name
Description
Pattern

0 ()

0 ()

Tools

clustalo Documentation

Latest version of Clustal: a multiple sequence alignment program for DNA or proteins

doi: 10.1038/msb.2011.75License: GPL v2

pigz Documentation

Parallel implementation of the gzip algorithm.

Authors