Description

Given segmented log2 ratio estimates (.cns), derive each segment’s absolute integer copy number

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

Output

Name
Description
Pattern

cns ()

versions ()

Tools

cnvkit Documentation

CNVkit is a Python library and command-line software toolkit to infer and visualize copy number from high-throughput DNA sequencing data. It is designed for use with hybrid capture, including both whole-exome and custom target panels, and short-read sequencing platforms such as Illumina and Ion Torrent.

License: Apache-2.0
Authors