Description

Compile a coverage reference from the given files (normal samples).

Input

Name
Description
Pattern

fasta (file)

File containing reference genome

*.{fasta}

targets (file)

File containing genomic regions

*.{bed}

antitargets (file)

File containing off-target genomic regions

*.{bed}

Output

Name
Description
Pattern

0 ()

0 ()

Tools

cnvkit Documentation

CNVkit is a Python library and command-line software toolkit to infer and visualize copy number from high-throughput DNA sequencing data. It is designed for use with hybrid capture, including both whole-exome and custom target panels, and short-read sequencing platforms such as Illumina and Ion Torrent.

https://github.com/etal/cnvkitdoi: 10.1371/journal.pcbi.1004873License: Apache-2.0
Authors