Description

command line tool for CNV/CNA analysis. This step imports the read depth data into a root pytor file.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

fasta (file)

specifies reference genome file (only for cram file without reference genome)

*.{fasta,fasta.gz,fa,fa.gz}

fai (file)

Index of reference fasta file

*.fai

Output

Name
Description
Pattern

0 ()

0 ()

Tools

cnvpytor -rd Documentation

calling CNVs using read depth

doi: 10.1101/2021.01.27.428472v1License: MIT
Authors