modules/
cobiontid_kmercounter

A rust based tool based on Needletail's FASTA parser tallies k-mer counts for large sequencing rounds. Written with downstream processing with Tensorflow or numpy in mind.

cobiontid kmer counts npy fasta

https://github.com/nf-core/modules/tree/master/modules/nf-core/cobiontid/kmercounter

Description

A rust based tool based on Needletail's FASTA parser tallies k-mer counts for large sequencing rounds. Written with downstream processing with Tensorflow or numpy in mind.

Input

Name

Description

Pattern

`0` ()

`1` ()

`kmer_size` (integer)

Size of kmer to scan the genome for.

Output

Name

Description

Pattern

`0` ()

Tools

kmer-counter Documentation

A rust based tool based on Needletail's FASTA parser tallies k-mer counts for large sequencing rounds. Written with downstream processing with Tensorflow or numpy in mind.