Description

A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

assembler (string)

The name of the tool used to assemble contigs

{metaspades,megahit,idba}

mink (integer)

The minimum kmer size used to assemble contigs

[0-9]+

maxk (integer)

The maximum kmer size used to assemble contigs

[0-9]+

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

cobra-meta Documentation

COBRA is a tool to get higher quality viral genomes assembled from metagenomes.

doi: 10.1038/s41564-023-01598-2License: MIT
Authors