Description

A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

0 ()

0 ()

0 ()

Output

Name
Description
Pattern

self_circular ()

extended_circular ()

extended_partial ()

extended_failed ()

orphan_end ()

all_cobra_assemblies ()

joining_summary ()

log ()

versions ()

Tools

cobra-meta Documentation

COBRA is a tool to get higher quality viral genomes assembled from metagenomes.

doi: 10.1038/s41564-023-01598-2License: MIT
Authors