Description
Copy number and genotype annotation from whole genome and whole exome sequencing data
Input
Name
Description
Pattern
Path to a BED or VCF file with SNP positions to create a mini pileup file from the initial BAM file provided in mateFile (optional)
*.{bed,vcf}
Path to directory with chromosome fasta files (optional, required if gccontentprofile is not provided)
*/
Tools
controlfreec/freec Documentation
Copy number and genotype annotation from whole genome and whole exome sequencing data.