Description

Generate fragment-delimited genomic bins

Input

Name
Description
Pattern

fasta (file)

Genome assembly FASTA file or folder containing FASTA files (uncompressed).

*.{fasta,fa}

chromsizes (file)

Path to a chromsizes file.

enzyme (string)

Name of restriction enzyme. e.g. CviQI.

Output

Name
Description
Pattern

0 ()

0 ()

Tools

cooler Documentation

Sparse binary format for genomic interaction matrices

https://github.com/open2c/coolerdoi: 10.1093/bioinformatics/btz540License: BSD-3-Clause
Authors