Description

Great....yet another TMA dearray program. What does this one do? Coreograph uses UNet, a deep learning model, to identify complete/incomplete tissue cores on a tissue microarray. It has been trained on 9 TMA slides of different sizes and tissue types.

Input

Name
Description
Pattern

0 ()

1 ()

Output

Name
Description
Pattern

cores ()

masks ()

tma_map ()

centroids ()

versions ()

Tools

coreograph Documentation

A TMA dearray porgram that uses UNet, a deep learning model, to identify complete/incomplete tissue cores on a tissue microarray.

https://github.com/HMS-IDAC/UNetCoreographdoi: 10.1038/s41592-021-01308-y
Authors