Description

Map reads to contigs and estimate coverage

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

bam_input (boolean)

True if input is bam files

interleaved (boolean)

True if input is interleaved fastq file

Output

Name
Description
Pattern

0 ()

0 ()

Tools

coverm Documentation

CoverM aims to be a configurable, easy to use and fast DNA read coverage and relative abundance calculator focused on metagenomics applications

https://github.com/wwood/CoverMdoi: 10.5281/zenodo.10531253License: GPL v3
nf-core pipelines with this module
metagenomeassembly
Authors