Description

Collects one or more subread/featureCounts raw output files (typically one per sample, for the same feature type/ORF caller) into a single long-format table with per-sample TPM (Transcripts Per Million) computed.

Input

Name
Description
Pattern

0 ()

1 ()

Output

Name
Description
Pattern

0 ()

0 ()

Tools

collectfeaturecounts Documentation

In-house R script that reshapes one or more raw featureCounts output files into a single long-format table (one row per feature/sample), computing transcripts per million (TPMs) per sample.

https://github.com/nf-core/modules/blob/master/modules/nf-core/custom/collectfeaturecounts/main.nf
Authors