Description

Collects per-sample read-processing statistics (trimming, decontamination, alignment, feature counting, and optionally taxonomy/function summaries) from a set of heterogeneous log/table files into a single overall-stats table per run.

Input

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Output

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Tools

collectstats Documentation

In-house R script that joins per-sample read-processing statistics from several upstream tools into a single wide table.

https://github.com/nf-core/modules/blob/master/modules/nf-core/custom/collectstats/main.nf
Authors