Description

Resolve the taxonomy for a set of sequences: use an explicit taxonomy file if one is given (warning, not silently ignoring, if the sequences also carry embedded taxonomy text); otherwise derive taxonomy from each sequence's own FASTA header, GTDB-style (>id taxonomy;string). Headers are always stripped down to a bare id in the output sequences, regardless of which taxonomy source was used. When taxonomy_required is false, records with neither source are dropped from the resolved taxonomy (with a warning) instead of failing the run.

Input

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Output

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Tools

biopython Documentation

Freely available tools for computational molecular biology.

https://github.com/biopython/biopythondoi: 10.1093/bioinformatics/btp163License: Biopython License Agreement
Authors