Description

Make a transcript/gene mapping from a GTF and cross-reference with transcript quantifications.

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

quant_type (string)

Quantification type, 'kallisto' or 'salmon'

id (string)

Gene ID attribute in the GTF file (default= gene_id)

extra (string)

Extra gene attribute in the GTF file (default= gene_name)

Output

Name
Description
Pattern

0 ()

0 ()

Tools

custom Documentation

"Custom module to create a transcript to gene mapping from a GTF and check it against transcript quantifications"

https://github.com/nf-core/modules/blob/master/modules/nf-core/custom/tx2gene/main.nfLicense: MIT
Authors