Description

A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage

Input

Name
Description
Pattern

0 ()

1 ()

fasta (file)

OPTIONAL FASTA reference file

*.{fasta,fna,fa}

fai (file)

OPTIONAL FASTA index file from samtools faidx

*.{fai}

specieslist (file)

OPTIONAL text file with list of target reference headers

*.{txt}

Output

Name
Description
Pattern

0 ()

0 ()

Tools

damageprofiler Documentation

A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage

https://github.com/Integrative-Transcriptomics/DamageProfilerdoi: 10.1093/bioinformatics/btab190License: GPL v3
Authors