Description

This tool takes an alignment of reads or fragments as input (BAM file) and generates a coverage track (bigWig or bedGraph) as output.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

fasta (file)

Reference file the CRAM file was created with (required with CRAM input)

*.{fasta,fa}

fasta_fai (file)

Index of the reference file (optional, but recommended)

*.{fai}

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

deeptools Documentation

A set of user-friendly tools for normalization and visualization of deep-sequencing data

https://github.com/deeptools/deepTools/doi: 10.1093/nar/gkw257License: GPL v3
Authors