Description

Queries a DIAMOND database using blastx mode

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

out_ext (string)

Specify the type of output file to be generated. blast corresponds to BLAST pairwise format. xml corresponds to BLAST xml format. txt corresponds to to BLAST tabular format. tsv corresponds to taxonomic classification format.

blast|xml|txt|daa|sam|tsv|paf

blast_columns (string)

Optional space separated list of DIAMOND tabular BLAST output keywords used for in conjunction with the 'txt' out_ext option (--outfmt 6). Options: qseqid sseqid pident length mismatch gapopen qstart qend sstart send evalue bitscore

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

diamond Documentation

Accelerated BLAST compatible local sequence aligner

https://github.com/bbuchfink/diamonddoi: 10.1038/s41592-021-01101-xLicense: GPL v3.0
nf-core pipelines with this module
asccblobtoolkit
Authors