Description

Detect differential ORF usage (DOU) and ORF-level differential translation efficiency (DTE) from Ribo-seq with matched RNA-seq using DOTSeq. Wraps DOTSeqDataSetsFromSummarizeOverlaps() + DOTSeq() + getContrasts() and emits the package's native contrast tables plus plotDOT() visualisations.

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Tools

dotseq Documentation

Differential ORF Translation analysis for Ribo-seq with matched RNA-seq

https://github.com/compgenom/DOTSeqLicense: MIT
Authors