Description

Perform eigen value decomposition on a cooler matrix to calculate compartment signal by finding the eigenvector that correlates best with the phasing track

Input

Name
Description
Pattern

0 ()

1 ()

bed (file)

bed file, phasing track for orienting and ranking eigenvectors,provided as /path/to/track::track_value_column_name

*.bed

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

cooltools Documentation

Analysis tools for genomic interaction data stored in .cool format

https://github.com/open2c/cooltools/doi: 10.5281/zenodo.5214125License: MIT
Authors