Description

Perform adapter and quality trimming on sequencing reads with reporting

Input

Name
Description
Pattern

0 ()

1 ()

Output

Name
Description
Pattern

reads ()

stats ()

debug ()

statspdf ()

reads_fail ()

reads_unpaired ()

log ()

versions ()

Tools

faqcs Documentation

FaQCs combines several features of currently available applications into a single, user-friendly process, and includes additional unique capabilities such as filtering the PhiX control sequences, conversion of FASTQ formats, and multi-threading. The original data and trimmed summaries are reported within a variety of graphics and reports, providing a simple way to do data quality control and assurance.

doi: 10.1186/s12859-014-0366-2License: GPLv3 License
Authors