Description

A program that counts sequence occurrences in FASTQ files.

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

Output

Name
Description
Pattern

count_matrix ()

stats ()

distribution_plot ()

reads_plot ()

reads_plot_percentage ()

versions ()

Tools

2FAST2Q Documentation

2FAST2Q is ideal for CRISPRi-Seq, and for extracting and counting any kind of information from reads in the fastq format, such as barcodes in Bar-seq experiments. 2FAST2Q can work with sequence mismatches, Phred-score, and be used to find and extract unknown sequences delimited by known sequences. 2FAST2Q can extract multiple features per read using either fixed positions or delimiting search sequences.

doi: 10.7717/peerj.14041License: GPL-3.0-or-later
Authors