Description

Perform adapter/quality trimming on sequencing reads

Input

Name
Description
Pattern

0 ()

1 ()

adapter_fasta (file)

File in FASTA format containing possible adapters to remove.

*.{fasta,fna,fas,fa}

discard_trimmed_pass (boolean)

Specify true to not write any reads that pass trimming thresholds. This can be used to use fastp for the output report only.

save_trimmed_fail (boolean)

Specify true to save files that failed to pass trimming thresholds ending in *.fail.fastq.gz

save_merged (boolean)

Specify true to save all merged reads to a file ending in *.merged.fastq.gz

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

fastp Documentation

A tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance.

doi: 10.1093/bioinformatics/bty560License: MIT
Authors