Description
Perform adapter/quality trimming on sequencing reads
Input
Name
Description
Pattern
File in FASTA format containing possible adapters to remove.
*.{fasta,fna,fas,fa}
Specify true to not write any reads that pass trimming thresholds. This can be used to use fastp for the output report only.
Specify true to save files that failed to pass trimming thresholds ending in *.fail.fastq.gz
Tools
fastp Documentation
A tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance.
doi: 10.1093/bioinformatics/bty560License: MIT