Description

Perform adapter/quality trimming and QC on long sequencing reads (ONT, PacBio, etc.)

Input

Name
Description
Pattern

0 ()

1 ()

adapter_fasta (file)

Optional FASTA file containing adapter sequences to trim.

*.{fasta,fa,fna}

discard_trimmed_pass (boolean)

If true, no reads that pass trimming thresholds will be written. Only reports will be generated.

save_trimmed_fail (boolean)

If true, reads that fail filtering will be saved to a file ending in *.fail.fastq.gz.

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

fastplong Documentation

Ultra-fast preprocessing and quality control for long-read sequencing data.

https://github.com/OpenGene/fastplongdoi: 10.1002/imt2.107License: MIT
Authors