Description

Run NCBI's FCS adaptor on assembled genomes

Input

Name
Description
Pattern

0 ()

1 ()

Output

Name
Description
Pattern

cleaned_assembly ()

adaptor_report ()

log ()

pipeline_args ()

skipped_trims ()

versions ()

Tools

fcs Documentation

The Foreign Contamination Screening (FCS) tool rapidly detects contaminants from foreign organisms in genome assemblies to prepare your data for submission. Therefore, the submission process to NCBI is faster and fewer contaminated genomes are submitted. This reduces errors in analyses and conclusions, not just for the original data submitter but for all subsequent users of the assembly.

https://github.com/ncbi/fcsLicense: United States Government Work
nf-core pipelines with this module
ascc
Authors