Description

Runs FCS-GX (Foreign Contamination Screen - Genome eXtractor) to screen and remove foreign contamination from genome assemblies

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

0 ()

0 ()

Output

Name
Description
Pattern

fcsgx_report ()

taxonomy_report ()

log ()

hits ()

versions ()

Tools

fcsgx Documentation

The NCBI Foreign Contamination Screen. Genomic cross-species aligner, for contamination detection.

https://github.com/ncbi/fcs-gxdoi: 10.1186/s13059-024-03198-7License: NCBI-PD
nf-core pipelines with this module
ascc
Authors