Description

Runs FCS-GX (Foreign Contamination Screen - Genome eXtractor) to screen and remove foreign contamination from genome assemblies

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

gxdb (directory)

Directory containing the FCS-GX database

ramdisk_path (string)

Path to RAM disk for improved performance (optional)

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

fcsgx Documentation

The NCBI Foreign Contamination Screen. Genomic cross-species aligner, for contamination detection.

nf-core pipelines with this module
ascc
Authors