Description

Uses FGBIO CallDuplexConsensusReads to call duplex consensus sequences from reads generated from the same double-stranded source molecule.

Input

Name
Description
Pattern

0 ()

1 ()

min_reads (string)

Minimum number of raw/original reads to build each consensus read. Can be a space delimited list of 1-3 values. See fgbio documentation for more details.

min_baseq (integer)

Ignore bases in raw reads that have Q below this value

Output

Name
Description
Pattern

0 ()

0 ()

Tools

fgbio Documentation

A set of tools for working with genomic and high throughput sequencing data, including UMIs

https://github.com/fulcrumgenomics/fgbioLicense: MIT
Authors