Description

Uses FGBIO FilterConsensusReads to filter consensus reads generated by CallMolecularConsensusReads or CallDuplexConsensusReads.

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

min_reads (integer)

Minimum number of reads required to keep a consensus read

min_baseq (file)

Minimum base quality to consider

max_base_error_rate (file)

Maximum base error rate for a position before it is replaced with an N.

Output

Name
Description
Pattern

0 ()

0 ()

Tools

fgbio Documentation

A set of tools for working with genomic and high throughput sequencing data, including UMIs

https://github.com/fulcrumgenomics/fgbioLicense: MIT
Authors