Description

Downsample a BAM by UMI family using streaming with fgumi

Input

Name
Description
Pattern

0 ()

1 ()

fraction (float)

Fraction of UMI families to keep (0.0 exclusive to 1.0 inclusive)

keep_rejected (boolean)

If true, write reads from families that were not kept to a separate rejects BAM file

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

fgumi Documentation

High-performance tools for UMI-tagged sequencing data.

https://github.com/fulcrumgenomics/fgumiLicense: MIT
Authors