Description

Calls duplex consensus sequences from reads generated from the same double-stranded source molecule. This is a high-performance replacement for fgbio CallDuplexConsensusReads.

Input

Name
Description
Pattern

0 ()

1 ()

min_reads (string)

Minimum number of raw/original reads to build each consensus read. Can be 1-3 values, e.g. [3 1 1] or 1

keep_rejected (boolean)

If true, output rejected reads to a separate BAM file

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

fgumi Documentation

High-performance tools for working with UMI-tagged sequencing data.

https://github.com/fulcrumgenomics/fgumiLicense: MIT
Authors