Description

Filters consensus reads generated by simplex or duplex consensus calling. This is a high-performance replacement for fgbio FilterConsensusReads.

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

min_reads (integer)

Minimum number of reads required to keep a consensus read

keep_rejected (boolean)

Whether to keep rejected reads in a separate BAM file

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

fgumi Documentation

High-performance tools for working with UMI-tagged sequencing data.

https://github.com/fulcrumgenomics/fgumiLicense: MIT
Authors