Description

Groups reads together that appear to have come from the same original molecule. Reads are grouped by template, and then templates are sorted by the 5' mapping positions of the reads from the template. Reads that have the same end positions are then sub-grouped by UMI sequence. This is a high-performance replacement for fgbio GroupReadsByUmi.

Input

Name
Description
Pattern

0 ()

1 ()

strategy (string)

Required argument: defines the UMI assignment strategy. Must be chosen among: Identity, Edit, Adjacency, Paired.

Output

Name
Description
Pattern

0 ()

0 ()

Tools

fgumi Documentation

High-performance tools for working with UMI-tagged sequencing data.

https://github.com/fulcrumgenomics/fgumiLicense: MIT
Authors