Description

Calls simplex consensus sequences from reads with the same unique molecular tag. This is a high-performance replacement for fgbio CallMolecularConsensusReads.

Input

Name
Description
Pattern

0 ()

1 ()

min_reads (integer)

Minimum number of original reads to build each consensus read.

keep_rejected (boolean)

If true, output rejected reads to a separate BAM file

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

fgumi Documentation

High-performance tools for working with UMI-tagged sequencing data.

https://github.com/fulcrumgenomics/fgumiLicense: MIT
Authors