Description

Functionally profile metagenomic samples using FracMinHash sketches against KEGG database references.

Input

Name
Description
Pattern

0 ()

1 ()

ko_sketch (file)

Sourmash signature reference sketch or Sequence Bloom Tree (SBT) of KEGG KOs

*.{sig,sig.zip,sbt.zip}

ksize (integer)

The k-mer size to use for the sketch (typically 7, 11, or 15)

scaled (integer)

The FracMinHash scale factor (e.g., 1000)

Output

Name
Description
Pattern

0 ()

0 ()

Tools

fmhfunprofiler Documentation

fmh-funprofiler is a pipeline that leverages FracMinHash (implemented in sourmash) to functionally profile metagenomic samples, offering a faster and more memory-efficient alternative to alignment-based methods.

doi: 10.1093/bioinformatics/btae397License: MIT
Authors