modules/
fungtion_downloadmodels

Downloads the pretrained ESM-1b weights (esm1b_t33_650M_UR50S.pt) that fungtion uses for fungal effector prediction into a local models/ directory via fungtion setup-models. The downloaded directory is used as input to the FUNGTION_FUNGTION prediction module.

fungal effector protein prediction language model deep learning model download

https://github.com/nf-core/modules/tree/master/modules/nf-core/fungtion/downloadmodels

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`0` ()

Tools

fungtion Documentation

Fungtion predicts and visualizes fungal effector proteins from protein FASTA sequences using ESM-1b protein language model embeddings and R-based SVM models. For predicted effectors it can generate similarity-network and relationship-tree visualizations and an HTML report.

License: MIT