Description

Predicts fungal effector proteins from protein FASTA sequences using ESM-1b protein language model embeddings and R-based SVM models. Optionally produces similarity-network and relationship-tree visualizations and an HTML report for predicted effectors. Requires the pretrained ESM-1b weights from FUNGTION_DOWNLOADMODELS as input.

Input

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Description
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pretrain (directory)

Directory containing the pretrained ESM-1b weights (esm1b_t33_650M_UR50S.pt), as produced by FUNGTION_DOWNLOADMODELS.

models

Output

Name
Description
Pattern

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Tools

fungtion Documentation

Fungtion predicts and visualizes fungal effector proteins from protein FASTA sequences using ESM-1b protein language model embeddings and R-based SVM models. For predicted effectors it can generate similarity-network and relationship-tree visualizations and an HTML report.

License: MIT
Authors