Description

Build ganon database using custom reference sequences.

Input

Name
Description
Pattern

0 ()

1 ()

input_tsv (string)

(Optional) Specify an TSV file containing the paths, and relevant metadata to the input FASTA files to use the --input-file option. The 'file' column should be just the file name of each FASTA file (so that it's local to the working directory of the process). See ganon documentation for more more information on the other columns.

*tsv

taxonomy_files (file)

Pre-downloaded taxonomy files of input sequences. See ganon docs for formats

genome_size_files (file)

Pre-downloaded NCBI or GTDB genome size files of input sequences. See ganon docs for formats

{species_genome_size.txt.gz,*_metadata.tar.gz}

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

ganon Documentation

ganon classifies short DNA sequences against large sets of genomic reference sequences efficiently

doi: 10.1093/bioinformatics/btaa458License: MIT
Authors