Description

Predict metabolic pathways from genomic data using gapseq

Input

Name
Description
Pattern

0 ()

1 ()

db (directory)

Optional gapseq reference sequence database directory (from GAPSEQ_REQUESTDB). Passed to gapseq via -D. If not provided, gapseq downloads the database itself.

gapseq_db

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

gapseq Documentation

gapseq is designed to combine metabolic pathway analysis with metabolic network reconstruction and curation. The find command predicts metabolic pathways from genomic information and databases for pathways and reactions.

https://github.com/jotech/gapseqdoi: 10.1186/s13059-021-02295-1License: AGPL-3.0-only
Authors