Description

Apply base quality score recalibration (BQSR) to a bam file

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

3 ()

4 ()

0 ()

1 ()

2 ()

3 ()

output_suffix (string)

Output file format, either "bam" or "cram" (cram is the default)

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

gatk4 Documentation

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size.

doi: 10.1158/1538-7445.AM2017-3590License: Apache-2.0
Authors