modules/
gatk4_composestrtablefile

This tool looks for low-complexity STR sequences along the reference that are later used to estimate the Dragstr model during single sample auto calibration CalibrateDragstrModel.

composestrtablefile dragstr gatk4

https://github.com/nf-core/modules/tree/master/modules/nf-core/gatk4/composestrtablefile

Description

This tool looks for low-complexity STR sequences along the reference that are later used to estimate the Dragstr model during single sample auto calibration CalibrateDragstrModel.

Input

Name

Description

Pattern

`0` ()

Output

Name

Description

Pattern

`str_table` ()

`versions` ()

Tools

gatk4 Documentation

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size.

doi: 10.1158/1538-7445.AM2017-3590License: Apache-2.0