Description

This tool locates and tags duplicate reads in a BAM or SAM file, where duplicate reads are defined as originating from a single fragment of DNA.

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

0 ()

Output

Name
Description
Pattern

cram ()

bam ()

crai ()

bai ()

metrics ()

versions ()

Tools

gatk4 Documentation

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size.

https://github.com/broadinstitute/gatkdoi: 10.1158/1538-7445.AM2017-3590License: MIT
Authors