Description

Identify translated ORFs from Ribo-seq BAMs using the PRICE algorithm

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

0 ()

1 ()

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

gedi Documentation

Gedi is a Java software platform for working with genomic data (sequencing reads, sequences, per-base numeric values, annotations). It provides the PRICE algorithm (Probabilistic Inference of Codon Activities by an EM algorithm) for ribosome profiling ORF discovery with near-cognate start codon detection.

https://github.com/erhard-lab/gedidoi: 10.1038/nmeth.4631License: GPL-3.0
Authors