Description

Generates a TSV index file from contacts BED file by sorting and extracting unique contact positions.

Input

Name
Description
Pattern

meta (map)

Groovy Map containing sample information e.g. [ id:'sample1' ]

contacts (file)

Contacts BED file to generate index for.

*.bed

Output

Name
Description
Pattern

versions_coreutils

${task.process} (string)

The name of the process

coreutils (string)

The name of the tool

ls --version | sed -n "s/ls (GNU coreutils) //p" (eval)

The expression to obtain the version of the tool

contacts_with_index

meta (map)

Groovy Map containing sample information e.g. [ id:'sample1' ]

contacts (file)

Input contacts BED file (passed through).

*.bed

*.index.tsv (file)

Path to index TSV file of the contacts.

*.index.tsv

Topics

Name
Description
Pattern

versions

${task.process} (string)

The name of the process

coreutils (string)

The name of the tool

ls --version | sed -n "s/ls (GNU coreutils) //p" (eval)

The expression to obtain the version of the tool

Tools

coreutils Documentation

GNU coreutils provides basic file, shell and text manipulation utilities.

License: GPL v3.0
Authors