Description

Estimate genome heterozygosity, repeat content, and size from sequencing reads using a kmer-based statistical approach

Input

Name
Description
Pattern

0 ()

1 ()

Output

Name
Description
Pattern

linear_plot_png ()

transformed_linear_plot_png ()

log_plot_png ()

transformed_log_plot_png ()

model ()

summary ()

lookup_table ()

fitted_histogram_png ()

versions ()

Tools

genomescope2 Documentation

Reference-free profiling of polyploid genomes

https://github.com/tbenavi1/genomescope2.0doi: 10.1038/s41467-020-14998-3License: Apache-2.0
nf-core pipelines with this module
genomeassembly
Authors