Description

Peak-calling for ChIP-seq and ATAC-seq enrichment experiments

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

blacklist_bed (file)

Bed file containing genomic intervals to exclude from the analysis

*.{bed}

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

genrich Documentation

Genrich is a peak-caller for genomic enrichment assays (e.g. ChIP-seq, ATAC-seq). It analyzes alignment files generated following the assay and produces a file detailing peaks of significant enrichment.

https://github.com/jsh58/GenrichLicense: MIT
Authors