modules/
getorganelle_config

Downloads databases needed for running getorganelle

assembly organelle mitochondria download database

https://github.com/nf-core/modules/tree/master/modules/nf-core/getorganelle/config

Description

Downloads databases needed for running getorganelle

Input

Name

Description

Pattern

`organelle_type` (string)

Type of database, esp. embplant_pt (embryophyta plant plastome), other_pt (non-embryophyta plant plastome), embplant_mt (plant mitochondrion), embplant_nr (plant nuclear ribosomal RNA), animal_mt (animal mitochondrion), and fungus_mt (fungus mitochondrion), fungus_nr (fungus nuclear ribosomal RNA)