Description

A single fast and exhaustive tool for summary statistics and simultaneous fa (fasta, fastq, gfa [.gz]) genome assembly file manipulation.

Input

Name
Description
Pattern

0 ()

1 ()

out_fmt (string)

Output format (fasta, fastq, gfa)

genome_size (integer)

estimated genome size (bp) for NG* statistics (optional).

target (string)

target specific sequence by header, optionally with coordinates (optional).

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

gfastats Documentation

The swiss army knife for genome assembly.

https://github.com/vgl-hub/gfastatsdoi: 10.1093/bioinformatics/btac460License: MIT
nf-core pipelines with this module
eargenomeassembly
Authors