Description

Tool for imputation and phasing from vcf file or directly from bam files.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

3 ()

4 ()

5 ()

6 ()

7 ()

8 ()

9 ()

0 ()

1 ()

2 ()

output_suffix (string)

Output file suffix used to choose the GLIMPSE2 output format. Defaults to vcf.gz when empty. Supported values: vcf, vcf.gz, bcf, bgen.

vcf|vcf.gz|bcf|bgen

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

glimpse2 Documentation

GLIMPSE2 is a phasing and imputation method for large-scale low-coverage sequencing studies.

https://github.com/odelaneau/GLIMPSEdoi: 10.1038/s41588-020-00756-0License: MIT
Authors